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Repetitive Dna Sequences software
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Repetitive Dna Sequences

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Added: March 16, 2010 | Visits: 638

MyCGR MyCGR is an Objective-Caml library and a collection of tools to use the Chaos Game Representation on DNA sequences. MyCGR can empirically check the level and power of the tests and apply them on DNA sequences. It can generalize the dinucleotide abundance profile to a CGR-based relative...



Platforms: *nix

License: Freeware Size: 1.8 MB Download (75): MyCGR Download

Added: January 25, 2010 | Visits: 859

Gene Construction Kit The Gene Construction Kit allows graphic manipulation of DNA sequences and sophisticated plasmid drawing options. It has an award winning interface design that allows graphic manipulation of DNA sequences in addition to providing sophisticated drawing capabilities. GCK was named the "Best Plasmid...





Platforms: Mac

License: Shareware Cost: $0.00 USD Download (178): Gene Construction Kit Download

Added: June 14, 2013 | Visits: 172

dna2abc dna2abc turns DNA sequences into musical sequences. The key feature is the rule editor; a rule is a regular expression paired with a Tcl script. dna2abc scans a DNA sequence, testing each regular expression: if it matches, the Tcl script is run.


Platforms: *nix

License: Shareware Cost: $0.00 USD Size: 1.91 MB Download (27): dna2abc Download

Added: June 24, 2013 | Visits: 208

JDSA JDSA is a Java program that will degenerately search DNA sequences. This program searches sequences for multiple nucleotides at a given position (positional degeneracy), limited overall sequence accuracy (group degeneracy) or variable spacing between multiple DNA sequences (spacing degeneracy)....


Platforms: Mac

License: Freeware Size: 51.2 KB Download (16): JDSA Download

Added: June 23, 2013 | Visits: 178

ProteinMusic ProteinMusic is a Java program converting DNA sequences into music. The original idea for this project came from R. D. King at the University of Wales, Aberystwyth and C. G Angus from the Shamen (King, R.D. & Angus, C.G. (1996)).


Platforms: Mac

License: Freeware Size: 204.8 KB Download (16): ProteinMusic Download

Released: June 26, 2012  |  Added: June 26, 2012 | Visits: 287

Geneious PRO Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis,...


Platforms: Windows

License: Shareware Cost: $249.00 USD Size: 30 MB Download (44): Geneious PRO Download

Released: November 17, 2012  |  Added: November 17, 2012 | Visits: 277

Geneious PRO x64 Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis,...


Platforms: Windows

License: Shareware Cost: $249.00 USD Size: 30 MB Download (66): Geneious PRO x64 Download

Released: November 12, 2012  |  Added: November 12, 2012 | Visits: 272

Geneious PRO for Vista Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis,...


Platforms: Windows, Mac, Linux

License: Shareware Cost: $249.00 USD Size: 30 MB Download (60): Geneious PRO for Vista Download

Released: June 22, 2012  |  Added: June 22, 2012 | Visits: 237

Bowtie Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.


Platforms: Windows, Mac, Linux

License: Freeware Size: 14.85 MB Download (27): Bowtie Download

Released: October 17, 2012  |  Added: October 17, 2012 | Visits: 196

Cleaver Cleaver is a program for comparing restriction endonuclease digests of orthologous DNA sequences from different taxa. It performs virtual restriction digests and searches for endonucleases that cleave DNA fragments from given taxa but not others.


Platforms: Windows, Mac, Linux

License: Freeware Size: 4.49 MB Download (27): Cleaver Download

Released: June 27, 2012  |  Added: June 27, 2012 | Visits: 263

FSA FSA is a probabilistic multiple sequence alignment algorithm which uses a 'distance-based' approach to aligning homologous protein, RNA or DNA sequences.


Platforms: Mac, BSD, Linux

License: Freeware Size: 9.61 MB Download (29): FSA Download

Released: November 23, 2012  |  Added: November 23, 2012 | Visits: 290

NSG's voucher specimen database A database to handle voucher specimens of DNA sequences used for molecular phylogenetics.


Platforms: Windows, Mac, Linux

License: Freeware Size: 1.23 MB Download (32): NSG's voucher specimen database Download

Released: December 11, 2012  |  Added: December 11, 2012 | Visits: 182

ProteinMusic ProteinMusic is a Java program converting DNA sequences into music. The original idea for this project came from R. D. King at the University of Wales, Aberystwyth and C. G Angus from the Shamen (King, R.D. & Angus, C.G. (1996)).


Platforms: Windows, Mac, BSD, Linux

License: Freeware Size: 206.88 KB Download (27): ProteinMusic Download

Released: October 27, 2012  |  Added: October 27, 2012 | Visits: 210

RFLP planner Find restriction enzymes that help differ known homologe DNA sequences (RFLP). Simulate electrophoresis gels. Usefull to investigate the diversity of a population by one of their common genes. Written in perl, uses bioperl modules and the GD library.


Platforms: Windows, Mac, Linux

License: Freeware Size: 10.84 KB Download (29): RFLP planner Download

Released: June 01, 2012  |  Added: June 01, 2012 | Visits: 209

TandemSearcher The TandemSearcher is a Java based application for searching for tandem repeats in the DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).


Platforms: Windows, Mac, Linux

License: Freeware Size: 43.24 KB Download (27): TandemSearcher Download

Released: July 14, 2012  |  Added: July 14, 2012 | Visits: 152

YeastsIdentification The YeastsIdentification is a Java based application for searching for unique DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).


Platforms: Windows, Mac, Linux

License: Freeware Size: 139.23 KB Download (27): YeastsIdentification Download

Added: November 29, 2013 | Visits: 232

IMMpractical IMMpractical implements various Markov chain model-based methods for analysis of DNA sequences. Please cite: Sparks, M.E., Brendel, V. and Dorman, K.S. (2007) Markov model variants for appraisal of coding potential in plant DNA. LNBI. 4463:394-405.


Platforms: *nix

License: Freeware Size: 112.64 KB Download (18): IMMpractical Download

Added: June 28, 2013 | Visits: 165

Biolet Biolet is project aimed to analyze genomic DNA sequences using wavelets. Of additional interest may be a batch processing tool for doing round-robin scheduling of jobs on a beowulf cluster. For that checkout the project robin from the CVS.


Platforms: *nix

License: Freeware Size: 3.75 MB Download (18): Biolet Download

Added: November 02, 2013 | Visits: 211

ESTScan ESTScan is a program that can detect coding regions in DNA sequences, even if they are of low quality. ESTScan will also detect and correct sequencing errors that lead to frameshifts. ESTScan is not a gene prediction program , nor is it an open reading frame detector. In fact, its strength lies...


Platforms: *nix

License: Freeware Size: 40.96 KB Download (20): ESTScan Download

Added: August 06, 2013 | Visits: 281

JBoss DNA JBoss DNA is a repository and set of tools that make it easy to capture, version, analyze, and understand the fundamental building blocks of information.As models, service and process definitions, schemas, source code, and other artifacts are added to the repository, JBoss DNA "sequences" the...


Platforms: Java

License: Freeware Size: 4.71 MB Download (18): JBoss DNA Download

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